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The oxDNA coarse-grained model as a tool to simulate DNA origamiJonathan P.K. Doye, Hannah Fowler, Domen Prešern, Joakim Bohlin, Lorenzo Rovigatti, Flavio Romano, Petr Šulc, Chak Kui Wong, Ard A. Louis, John S. Schreck, Megan C. Engel, Michael Matthies, Erik Benson, Erik Poppleton and Benedict E.K. SnodinMethods in Molecular Biology; DNA and RNA origami: Methods and Protocols, Vol. 2639, 93-112 (2023)AbstractThis chapter introduces how to run molecular dynamic simulations for DNA origami using the oxDNA coarse-grained coarse-grained model.The full paper is available here and on arXiv. The complete book is available here. Data associated with this publication is available at the Oxford Research Archive. |