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The oxDNA coarse-grained model as a tool to simulate DNA origami

Jonathan P.K. Doye, Hannah Fowler, Domen Prešern, Joakim Bohlin, Lorenzo Rovigatti, Flavio Romano, Petr Šulc, Chak Kui Wong, Ard A. Louis, John S. Schreck, Megan C. Engel, Michael Matthies, Erik Benson, Erik Poppleton and Benedict E.K. Snodin

Methods in Molecular Biology, submitted

Abstract

This chapter introduces how to run molecular dynamic simulations for DNA origami using the oxDNA coarse-grained coarse-grained model.


The full paper is available from arXiv. Data associated with this publication is available at the Oxford Research Archive.